Preface

Biological properties of soil are not only essential for the maintenance of soil fertility and the sustainability of the plant-soil ecosystems, but also indicators of land reclamation of contaminated or disturbed soils. This experiment involves two plants (barley and field pea) growing in four soils with different hydrocarbon contents. The objective was to study the effect of hydrocarbons on plant growth and microbial activity, and to evaluate the acid phosphatase activity as an indicator of reclamation of hydrocarbon-contaminated soils. Barley root mass decreased with the increase of the hydrocarbon content but field pea roots were not sensitive to the hydrocarbon content in this experiment. The hydrocarbon contamination reduced the plant growth but increased the microbial activity. The acid phosphatase activity was controlled by both plant root production and microbial activity, therefore it was not a good indicator of the reclamation of oil-contaminated soils.     

Marinifilum flexuosum sp. nov., a new Bacteroidetes isolated from coastal Mediterranean Sea water and emended description of the genus Marinifilum Na et al., 2009

A facultatively anaerobe, moderately halophilic, Gram-negative, filamentous, non motile and unpigmented bacterium, designated M30^T, was isolated from coastal Mediterranean Sea water in Valencia, Spain. Phylogenetic analysis based on 16S rRNA sequences placed this strain in the phylum “Bacteroidetes” with Marinifilum fragile JC2469^T as its closest relative with 97% sequence similarity. Average nucleotide identity (ANI) values between both strains were far below the 95% threshold value for species delineation (about 89% using BLAST and about 90% using MUMmer). A comprehensive polyphasic study, including morphological, biochemical, physiological, chemotaxonomic and phylogenetic data, confirmed the independent species status of strain M30^T within the genus Marinifilum, for which the name Marinifilum flexuosum sp. nov. is proposed. The type strain of Marinifilum flexuosum is M30^T (=CECT 7448^T = DSM 21950^T).     

Cumulative bleaching undermines systemic resilience of the Great Barrier Reef

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Further surveys of Pseliodinium vaubanii Sournia (Pirrophyta) in the Adriatic sea

Abstract

The presence, in the North Adriatic sea and in the Chioggia and Marano lagoons, of Pseliodinium vaubanii a rare dinoflagellate species, is reported. Our results showed that Pseliodinium vaubanii is a very frequent and abundant species in these environments.     

Hbox1 and Hbox7 are involved in pattern formation in sea urchin embryos

In spite of their potential importance in evolution, there is little information about Hox genes in animal groups that are related to ancestors of deuterostome. It has been reported that only two Hox genes (Hbox1 and Hbox7) are expressed significantly in sea urchin embryos. Expression of Hbox1 protein is restricted to the aboral ectoderm, and Hbox7 expression is restricted to oral ectoderm, endoderm and secondary mesenchyme cells in sea urchin embryos after the gastrula stage. With the aim of gaining insight into the role of Hbox1 and Hbox7 in sea urchin development, Hbox1 and Hbox7 overexpression experiments were performed. Overexpression of Hbox1 repressed the development of oral ectoderm, endoderm and mesenchyme cells. On the contrary, overexpression of Hbox7 repressed the development of aboral ectoderm and primary mesenchyme cells. The data suggest that Hbox1 and Hbox7 are expressed in distinct non-overlapping territories, and overexpression of either one inhibits territory-specific gene expression in the domain of the other. It is proposed that an important function of both Hbox1 and Hbox7 genes is to maintain specific territorial gene expression by each one, in its domain of expression, while repressing the expression of the other in this same domain.     

Homeoviscous theory under pressure: II. The molecular order of membranes from deep-sea fish

The molecular order of brain and liver membranes isolated from deep sea and continental shelf fish species have been estimated and compared using the fluorescence polarization technique in order to determine whether life in a high pressure habitat is associated with an adjustment of membrane order. Fish were trawled at depths between 200 m and 4000 m, liver and brain membranes were fractionated, and fluorescence polarization was measured at 4°C and ambient pressure. Polarization of the brain myelin fraction provided a statistically significant regression with depth of capture ($\text{P<0.001}$) with a slope of ?0.004 km^?1. This change in polarization with depth was sufficient to offset approximately half of the pressure-induced increase in polarization and thus represents the first structural evidence of homeoviscous adaptation to pressure. Polarization of the brain synaptic and liver mitochondrial fraction was not significantly related to depth. This may be due, at least in part, to a high individual variability of polarization compared to laboratory-acclimated freshwater fish.     

Pockmarks enhance deep‐sea benthic biodiversity: a case study in the western Mediterranean Sea

Aim Pockmarks are craters on the sea floor formed by sub‐sea‐floor fluid expulsions, which occur world‐wide at all ocean depths. These habitats potentially host a highly specialized fauna that can exploit the hydrocarbons released. Pockmarks at relatively shallow depths can be easily destroyed by human activities, such as bottom trawling. In the present study, we investigated the combined effects of sea‐floor heterogeneity, rate of fluid emission and trophic conditions of different pockmarks on the biodiversity of the deep‐sea assemblages. Location Continental slope of the Gulf of Lions, western Mediterranean Sea, at water depths from 265 to 434 m. Methods We investigated the biodiversity associated with sea‐floor pockmarks that are both inactive and that have active gas emissions. Control sites were selected on the sea floor outside the influence of the gas seepage, both within and outside the pockmark fields. We examined the combined effects of: (i) sea‐floor heterogeneity; (ii) variable levels of fluid (gas) emissions; and (iii) trophic characteristics of the meiofaunal assemblage structure and nematode diversity. Results Sediments within the pockmark fields had lower meiofaunal abundance and biomass when compared with the surrounding sediments that were not influenced by the gas seepage. Although several higher taxa were absent in the pockmarks (e.g. Turbellaria, Tardigrada, Cumacea, Isopoda, Tanaidacea, Nemertina and Priapulida, which were present in the control areas), the richness of the nematode species within all of these pockmarks was very high. About 25% of the total species encountered in the deep‐sea sediments of the investigated areas was exclusively associated with these pockmarks. Main conclusions We conclude that both active and inactive pockmarks provide significant contributions to the regional (gamma) diversity of the continental slope in the western Mediterranean Sea, and thus the protection of these special and fragile habitats is highly relevant to the conservation of deep‐sea biodiversity.